BtaEX6047254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103986874-103989929:-
Coord C1 exon
chr11:103989782-103989929
Coord A exon
chr11:103989563-103989660
Coord C2 exon
chr11:103986874-103988328
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTGCTCCCCTCGCAGGCA
3' ss Score
10.89
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATCCTGATCCGGAACCGAGCCACCGACCTGGATGCCCGCATGCACGACGGCACGACCCCGCTGATCCTCGCTGCCCGCCTGGCCGTGGAGGGCATGCTGGAGGACCTCATCAACTCTCACGCCGACGTCAACGCTGTGGATGACCTGG
Seq A exon
GCAAGTCCGCCCTGCACTGGGCAGCCGCGGTGAACAACGTGGAGGCTGCTGTCGTGCTGCTGAAGAACGGGGCCAACAAGGACATGCAGAACAACAAG
Seq C2 exon
GAGGAGACGCCCTTGTTCCTGGCCGCCCGGGAGGGCAGCTACGAGACCGCCAAGGTGCTGCTGGACCATTTTGCCAACCGGGACATCACAGACCACATGGACCGCCTGCCTCGCGACATCGCGCAGGAGCGTATGCACCACGACATCGTGCGGCTGCTGGACGAGTACAGCCTGGTGCGCAGCCCCCCGCTGCATGGCGCCACCCTGGGCGGCACGCCCACCCTGTCGCCCCCGCTCTGCTCGCCCAACGGCTACCTGGGCAACCTCAAGCCCCCCATGCAGGGCAAGAAGGCCCGCAAGCCCAGCACCAAGGGCCTGGCCTGCGGCGGCAAGGAGCCCAAGGACCTCAAGGCTCGGAGGAAGAAGTCCCAAGATGGCAAGGGCTGTCTGCTGGACAGCGGGAGCGTGATGTCGCCCGTGGACTCCCTCGAGTCCCCCCACGGCTACCTGTCAGACGTGGCCTCCCCACCCCTCCTGCCCTCCCCTTTCCAGCCGTCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'40-35,'40-34,41-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.785
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(13.3=26.0),PF127962=Ank_2=PU(30.4=56.0)
A:
PF127962=Ank_2=FE(34.8=100)
C2:
PF127962=Ank_2=PD(32.6=6.2),PF119363=DUF3454=WD(100=13.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACGCTGTGGATGACCTG
R:
GATGTCGTGGTGCATACGCTC
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]