RnoEX6016015 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3905453-3910102:-
Coord C1 exon
chr3:3909955-3910102
Coord A exon
chr3:3909760-3909857
Coord C2 exon
chr3:3905453-3908592
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCGCTTCCTCTCCAGGCA
3' ss Score
11.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCCTGCTCCGGAACAGAGCCACAGATCTGGATGCCCGAATGCATGATGGCACAACCCCTCTGATCCTGGCGGCACGCCTGGCCGTGGAAGGCATGCTAGAGGACCTCATCAACTCTCACGCTGATGTCAATGCTGTGGATGACCTAG
Seq A exon
GCAAGTCAGCTCTGCACTGGGCAGCCGCTGTGAACAATGTGGACGCTGCTGTTGTGCTCCTGAAGAACGGAGCCAACAAAGACATGCAGAACAACAAG
Seq C2 exon
GAGGAGACTCCCCTGTTCCTGGCCGCCCGTGAGGGCAGCTATGAGACTGCCAAAGTGTTGCTGGACCACTTTGCCAACCGGGACATCACGGATCACATGGACCGATTGCCACGGGACATTGCACAGGAGCGCATGCACCACGATATCGTGCGGCTTTTGGATGAATACAACCTGGTGCGCAGCCCACAGCTGCATGGCACTGCCTTGGGTGGCACACCCACTCTGTCTCCCACACTCTGCTCGCCCAACGGCTACCTGGGCAACCTCAAGTCTGCCACACAGGGCAAGAAGGCCCGAAAGCCCAGCACCAAAGGGCTGGCTTGCAGTAGCAAGGAAGCTAAGGACCTCAAGGCCCGGAGGAAGAAGTCCCAGGATGGCAAGGGCTGCCTGTTGGACAGCTCAAGCATGCTGTCACCCGTGGACTCCCTCGAGTCACCCCATGGCTACTTGTCAGATGTGGCCTCACCACCCCTCCTTCCCTCCCCGTTCCAGCAGTCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'42-42,'42-41,43-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.212 C2=0.778
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(10.6=26.0),PF0002325=Ank=WD(100=66.0)
A:
PF127962=Ank_2=PU(31.1=84.8)
C2:
PF127962=Ank_2=PD(66.7=12.4),PF119363=DUF3454=WD(100=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCATGCTAGAGGACCT
R:
GTGGCAATCGGTCCATGTGAT
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]