DreEX6014345 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:64998482-65005015:-
Coord C1 exon
chr5:65004868-65005015
Coord A exon
chr5:65003444-65003541
Coord C2 exon
chr5:64998482-65002012
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTTGCGACACAGGTA
3' ss Score
8.25
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTTTGATACGGAACCGCGCCACAGATCTAGACGCCCGCATGCATGATGGCACCACACCTCTGATACTGGCCGCAAGACTGGCGGTCGAGGGCATGGTGGAGGAACTCATCAACTGCCATGCTGACGTTAATGCCATTGATGACTTTG
Seq A exon
GTAAATCTGCTCTTCACTGGGCAGCAGCTGTGAACAATGTAGATGCAGCGATGGTGTTGCTTAAGAATGGGGCAAATAAAGACATGCAGAACAATAAG
Seq C2 exon
GAGGAGACTCCTCTTTTCCTGGCGGCAAGGGAAGGAAGTTACGAGACGGCTAAAGTTCTTCTGGAGCATTTTGCAAACCGGGAAATCACAGACCACATGGATCGACTCCCGCGAGACATCGCGCAAGACAGAATGCATCATGATATTGTGCGTCTTATTGATGAATACAACCTAGTGCGCAGTCCTCCCATGCACAGCGCCCCGCTCTGCACCACGCTTTCCCCACCCCTCTGCTCCCCCAATGGCTTCATGGGCAACATGAAGCCCTCGGTGCAAAGCAAAAAACCTCGTAAGCCCAGCACTAAAGGCATCGGCTGCAAAGACGGCAAAGATATGAAAGTCAAAAAGAAGAAAGCACAAGACGGAAAGGGAAACTTATTAGACAGCTCGGCTGTTCTCTCTCCGGTGGATTCCCTAGAGTCGCCTCACGGGTATATTTCTGACATCGCCTCGCCACCCCAGATGACATCACCCTTCCAACAATCGCCCTCCATGTCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.848
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.4=26.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=7.0),PF119363=DUF3454=WD(100=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACTGCCATGCTGACGTT
R:
TTCTGTCTTGCGCGATGTCTC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]