BtaEX6037372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017037 | PKN1
Description
Bos taurus protein kinase N1 (PKN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080246]
Coordinates
chr7:12412414-12415268:-
Coord C1 exon
chr7:12415074-12415268
Coord A exon
chr7:12412646-12412755
Coord C2 exon
chr7:12412414-12412557
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCACCCCTGTTCCAGATG
3' ss Score
9.85
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGACCCTGGAGGTGCGTGTGGTGGGCTGCAGAGACCTTCCAGAGACCATCCCTTGGAACCCTTCACCTTCGGTGGGGGGACCTGGGACCCCTGACAGCCGCACCCCCTTCCTGAGCCGCCCAGCCCGAGGTCTTTACAGCCGAACCGGAAGTCTCAGTGGCAGGAGCAGCCTCAAAGCGGAAGCTGAGAACACCA
Seq A exon
ATGAGGTGAGCACTGTTCTCAAGCTGGATAACACAGTGGTGGGACAGACATCCTGGAAGCCGTGTGGCCCCAACGCCTGGGACCAGAGCTTTACCCTGGAACTGGAGAGG
Seq C2 exon
GCACGGGAATTGGAGTTGGCTGTGTTCTGGCGGGACCAGCGGGGCCTGTGTGCCCTCAAATTCCTGAAGTTGGAGGATTTCTTGGACAACGAGAGGCATGAGGTGCAGCTGGACATGGAACCTCAGGGCTGCCTGGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017037-'8-15,'8-13,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.054 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTGGAACCCTTCACCTT
R:
CACCTCATGCCTCTCGTTGTC
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]