RnoEX0066431 @ rn6
Exon Skipping
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24814082-24817098:-
Coord C1 exon
chr19:24816904-24817098
Coord A exon
chr19:24814311-24814420
Coord C2 exon
chr19:24814082-24814225
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTCTCCTGGTTTCAGCTG
3' ss Score
9.32
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GGACCCTGGAAGTACGAGTGGTGGGCTGCAAAAACCTTCCCGAGACCATCCCTTGGAGCCCTCCCCCCTCAGTCGGGGCATCTGGGACCCCCGACAGCCGCACTCCTTTCCTGAGTCGTCCAGCTCGGGGCCTTTACAACCGAAGTGGAAGCCTTAGTGGACGGAGCAGCCTCAAGGGGGAGGCAGAGAATTCCA
Seq A exon
CTGAGGTCAGCACCGTGCTCAAGCTGGACAACACTGTGGTGGGGCAAACAGCCTGGAAGCCATGCGGCCCCAATGCCTGGGACCAGAGCTTCACCCTGGAGCTGGAGAGG
Seq C2 exon
GCTCGGGAGCTGGAGTTGGCTGTGTTCTGGCGTGACCAGAGGGGTCTGTGTGCTCTCAAATTTCTGAAGTTGGAAGACTTCTTGGACAATGAGAGGCATGAGGTGCAGCTGGACATGGAACCCCAGGGCTGCCTGGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=0.054 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000005770fB10791
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGGAAGTACGAGTGGT
R:
TTTGAGAGCACACAGACCCCT
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]