BtaEX6037379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017037 | PKN1
Description
Bos taurus protein kinase N1 (PKN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080246]
Coordinates
chr7:12404475-12406312:-
Coord C1 exon
chr7:12406237-12406312
Coord A exon
chr7:12406044-12406135
Coord C2 exon
chr7:12404475-12404651
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGTGACCACTGTGGTTTCAGGTG
3' ss Score
8.39
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CCCTCTGAGGAAGTCACCCCTGACCCTCGAGGATTTCAAGTTCCTGGCAGTGCTGGGCCGGGGTCACTTTGGGAAG
Seq A exon
GTGCTGCTCTCTGAATTCCGGCCCAGTGGGGAGCTGTTCGCCATCAAGGCTTTGAAGAAAGGGGACATTGTGGCCCGAGACGAGGTGGAGAG
Seq C2 exon
CCTGATGTGTGAGAAGCGGATCTTGGCAGCTGTGACCAATGCGGGACACCCCTTTCTGGTGAACCTGTTTGGCTGTTTCCAGACACCAGAGCATGTATGCTTCGTGATGGAGTACTCAGCTGGTGGGGACCTGATGCTGCACATCCACAGTGATGTGTTCTCGGAGCCCCGTGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017037-'22-26,'22-23,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGTTCCTGGCAGTGCTG
R:
CCCACCAGCTGAGTACTCCAT
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]