MmuEX7022212 @ mm10
Exon Skipping
Gene
ENSMUSG00000057672 | Pkn1
Description
protein kinase N1 [Source:MGI Symbol;Acc:MGI:108022]
Coordinates
chr8:83672156-83673556:-
Coord C1 exon
chr8:83673481-83673556
Coord A exon
chr8:83673302-83673393
Coord C2 exon
chr8:83672156-83672332
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCTACTGTGTTCCAGGTG
3' ss Score
11.11
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCCCTTGAGAAAGTCGCCCCTGACACTTGAGGACTTCAAGTTCCTGGCCGTGCTTGGCCGGGGTCACTTTGGAAAG
Seq A exon
GTGCTGCTGTCTGAATTCCGCTCCAGTGGGGAGCTCTTTGCCATCAAAGCCTTGAAGAAAGGTGACATTGTAGCCCGAGATGAGGTTGAGAG
Seq C2 exon
CCTGATGTGTGAGAAGCGGATTTTGGCGGCCGTGACCAGGGCAGGACATCCCTTCCTGGTGAACCTTTTCGGCTGTTTCCAGACCCCAGAGCACGTGTGCTTTGTGATGGAGTACTCGGCGGGTGGAGACCTGATGCTGCACATTCATAGCGACGTGTTCTCAGAGCCTCGGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057672-'47-52,'47-50,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(24.5=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTTCAAGTTCCTGGCC
R:
CGCCGAGTACTCCATCACAAA
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types