GgaEX7006861 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14122679-14124117:-
Coord C1 exon
chr8:14124042-14124117
Coord A exon
chr8:14123867-14123958
Coord C2 exon
chr8:14122679-14122855
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCATTTATTCTTTGTTTCAGGTG
3' ss Score
11.97
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AACACAACAAAGATTTCAATTCAGTCTGAAGGACTTCAGATGTTGTGCAGTACTTGGCAGAGGACATTTTGGAAAG
Seq A exon
GTGCTGCTGGCAGAGTACAAAAACACAAATGAGATGTTTGCTATTAAAGCCTTAAAGAAAGGAGATATTGTTGCTCGTGATGAAGTAGACAG
Seq C2 exon
CTTGATGTGTGAAAAGCGAATATTTGAAACTGTGAATAGTGTAAGACATCCCTTCTTGGTGAATCTTTTCGCTTGTTTCCAAACCAAAGATCACGTTTGCTTTGTAATGGAATATGCTGCTGGTGGGGATCTGATGATGCACATTCATACTGATGTCTTCTCTGAACCAAGAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'19-19,'19-17,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(21.0=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTACTTGGCAGAGGAC
R:
ATCATCAGATCCCCACCAGCA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]