MmuEX6074487 @ mm9
Exon Skipping
Gene
ENSMUSG00000004591 | Pkn2
Description
protein kinase N2 [Source:MGI Symbol;Acc:MGI:109211]
Coordinates
chr3:142466518-142472681:-
Coord C1 exon
chr3:142472606-142472681
Coord A exon
chr3:142472437-142472528
Coord C2 exon
chr3:142466518-142466694
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTTATTTATTCTTATTTCAGGTG
3' ss Score
8.73
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGCTCAGCAGAGGTTTCAGTTCAGTCTACAGGACTTCAGGTGCTGTGCTGTCTTGGGGAGAGGACACTTTGGAAAG
Seq A exon
GTGCTGTTGGCGGAATATAAACACACAAATGAAATGTTTGCAATAAAAGCCTTAAAGAAAGGAGACATTGTGGCACGAGATGAAGTAGACAG
Seq C2 exon
CCTGATGTGTGAAAAAAGAATTTTTGAGACTGTGAATAGTGTCAGGCACCCGTTTCTAGTGAACCTTTTTGCATGTTTCCAAACAAAAGAACATGTTTGCTTCGTGATGGAGTATGCTGCAGGTGGTGACCTGATGATGCACATCCATACTGATGTCTTCTCTGAACCCAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004591-'16-20,'16-18,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGTGCTGTGCTGTCTTG
R:
GTCACCACCTGCAGCATACTC
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: