DreEX0006837 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25329598-25332461:-
Coord C1 exon
chr6:25332386-25332461
Coord A exon
chr6:25332128-25332219
Coord C2 exon
chr6:25329598-25329774
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATATTTATTTATTCAACAGGTT
3' ss Score
8.39
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GGAAGAAGAGGAAGTTCAGTTCAGTTTGTCAGATTTTAAATGTGTAGCTGTTCTGGGACGTGGCCACTTTGGAAAG
Seq A exon
GTTTTACTCGCCGATTACAAAACCACTGGAGAAATGTTTGCCATTAAAGCTTTGAAAAAAGGTGACATCGTTGCAAGGGATGAAGTGGACAG
Seq C2 exon
CCTGATGTGCGAAAAGAGGATCTTTGAGACTGTGAACAGTGTTCGGCATCCATTCCTGGTGAACCTCTTTGCTTGTTTCCAGACCAAGGAGCATGTGTGTTTCGTCATGGAGTACGCAGCTGGAGGAGACCTGATGATGCACATCCATGCAGATGTGTTTTCTGAAACGCGCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAGCTGTTCTGGGACGTG
R:
TCATCAGGTCTCCTCCAGCTG
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]