RnoEX0066441 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248751228-248756811:-
Coord C1 exon
chr2:248756736-248756811
Coord A exon
chr2:248756568-248756659
Coord C2 exon
chr2:248751228-248751404
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATTCTTATTTCAGGTG
3' ss Score
10.44
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCTCAACAGAGGTTTCAGTTTAATCTACAAGACTTCAGGTGCTGTGCTGTCTTGGGGAGAGGACACTTTGGAAAG
Seq A exon
GTGCTGTTGGCAGAATATAAACACACAAATGAAATGTTTGCAATAAAAGCCTTAAAGAAAGGGGACATTGTGGCACGAGATGAAGTAGACAG
Seq C2 exon
CTTGATGTGTGAAAAAAGAATTTTTGAGACTGTGAACAGTGTCCGGCATCCTTTCCTAGTGAACCTGTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTTTGTGATGGAGTACGCTGCTGGTGGGGACCTGATGATGCACATCCACACTGACGTCTTCTCTGAACCCAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'40-29,'40-28,41-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGAGGACACTTTGGAA
R:
ACGTCAGTGTGGATGTGCATC
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]