BtaEX6016733 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55245772-55253986:-
Coord C1 exon
chr3:55253911-55253986
Coord A exon
chr3:55253742-55253833
Coord C2 exon
chr3:55245772-55245948
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAATCTAATTTCAGGTG
3' ss Score
8.98
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATCTCAACAAATGTTTCAGTTCAGTCTACAAGACTTCAGATGTTGTGCTGTCTTGGGTAGAGGACATTTTGGAAAG
Seq A exon
GTGCTTTTGGCTGAATATAAACACACTAATGAAATGTTTGCTATAAAAGCCTTAAAGAAAGGAGACATTGTGGCACGAGATGAAGTAGACAG
Seq C2 exon
CCTGATGTGTGAAAAAAGAATTTTTGAAACTGTGAACAGTGTAAGGCATCCCTTTTTGGTGAACCTTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTTTGTAATGGAATATGCTGCCGGTGGGGACCTAATGATGCACATTCACACTGATGTCTTTTCTGAACCAAGAGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900-'27-24,'27-23,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(11.8=50.0)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCTTGGGTAGAGGACA
R:
GTGCATCATTAGGTCCCCACC
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]