BtaEX6038037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16389036-16391318:+
Coord C1 exon
chr7:16389036-16389401
Coord A exon
chr7:16390006-16390131
Coord C2 exon
chr7:16390718-16391318
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACTGTCTTCTCTGCTCCAGACT
3' ss Score
8.46
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCAGTTCTACAGCAACGGAGGGCATTCGGGGAATGCCGGTGGTGGCGGCGGCGGGGGCGGTGGTGGCTCTTCTGGCTACGGTTCCTACTACCAAGGTGACAACTACAACTCCCCAGTGCCCCCAAAACACGCCGGGAAGAAGCAGCCGCACGGGGGCCAACAGAAGCCCTCATATGGCTCAGGCTACCAGCCCCACCAAGGCCAGCAACAGTCCTACAGCCAGAGCCAGTACAGCAACTACGGACCCCCACAGGGCAAGCAGAAAGGCTACAATCACGGACAAGGCAACTACTCCTCGTACTCCAATTCCTACGGCTCCCCTGGAGGTGGAGGCGGATCCGACTACAGCTACGAGAGCAAATTCA
Seq A exon
ACTACAGTGGTAGTGGAGGCCGAAGCGGCGGGAACAGCTACGGCTCAGGCGGATCGTCCTACAACCCAGGGTCACATGGGGGCTATGGAGGTTCTGGGGGCAGCTCCTCATACCAAGGCAAACAAG
Seq C2 exon
GAGGCTACTCGTCACAGTCAAACTACAACTCTCCAGGGTCCGGCCAGAATTACAGCGGTCCTCCCAGCTCCTACCAGTCATCACAAGGGGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAATACAGATAAAGCCCCCGAGGGGTGAAGATTTGTACCTTCTGCACTTAACCCTCCCGTTGTAAGATTCAGTTTTATGCATCACAGTTAACATGTCAACCGGCCTCTCCAGGCCCCTCCGCCCTCCCCTGTCCACGTTGCCGTGTCGTGAGGTGCAGCTGGTCACCCCTGTGACCCGTCCTGTGACCCATATTTAGCCGTGTTTGGGACTCCGTGTCTTCAATGGTTTGTTAGTTGCCATTACAACTTTGTCTGAGTAGAGTTTTTTGAGTTCTTGCAGTTAAGTATCCCTCTGTCTATTTACGATTGGTGTTAGTGTTAACTCAGTTTGTCTTTAAATAGTCACGGAAGGGATACGTCATCTGTTAATGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-'21-28,'21-27,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTACAGCAACTACGGAC
R:
GTGGTCTGCGTTTCTGCCATA
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]