MmuEX1015135 @ mm10
Exon Skipping
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21403136-21405360:+
Coord C1 exon
chr9:21403136-21403501
Coord A exon
chr9:21404060-21404191
Coord C2 exon
chr9:21404696-21405360
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACACTGATTCCTTCCTCAGACT
3' ss Score
7.89
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCAGTTCTACAGCAATGGAGGGCATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCTCATCCAGCTACAGCTCCTACTACCAAGGAGACAGCTACAACTCACCAGTACCCCCGAAGCATGCTGGGAAGAAGCCGCTGCATGGGGGCCAGCAGAAAGCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAACCTTACAACCAGAGCCAGTACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATGGGCAGGGCAGCTACTCCTCCTACTCCAACTCTTACAACTCCCCAGGTGGTGGTGGGGGCTCTGACTACAGCTACGACAGCAAATTCA
Seq A exon
ACTACAGTGGGAGTGGAGGCCGGAGTGGAGGCAACAGCTATGGCTCCAGCGGGTCATCGTCCTACAACACAGGCTCACATGGAGGCTATGGCACAGGCTCCGGAGGCAGCTCTTCATACCAAGGCAAACAAG
Seq C2 exon
GAGGCTACTCATCACAGTCAAACTACAGCTCACCTGGGTCCAGCCAGAGCTACAGTGGTCCTGCCAGCTCCTACCAGTCCTCACAGGGTGGCTACAGTCGGAACACAGAGCACAGCATGAACTACCAGTACAGATAAAGGCCCAGGCTGCCTGCCCCTCTCAACCTTCTGCACCTCTGCCTCCAACTTGTCTCGGGAGATTGAGTCTGCACATCACCAGTTGCCATGTTCACTGGGCCAGTGCCCACCCGTCCACGTTGCTGACATTGCCACGCTTTGAGGTGTGGTGGTCGCTGGGACCCGTGCCGTGACCCCTATTTAGCTGTGTTTTGGACTCCGTGTCTTCAGTGGTTTGTTAGTTACCATTACGTAAACCTTGTCTGAGTAGTGTTCCGAGGTCTTGCCGTTCCGGATCCCTCTGTCTGTTTATGCCTGGTGTGAGTTCCATCGGGTGTCTTTAAATAGTTGCAGAAGGGATACGTCATCTGTTAATGCTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178-'60-51,'60-49,64-51
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAGAGCCAGTACAGCAG
R:
CTGTGTTCCGACTGTAGCCAC
Band lengths:
257-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types