HsaEX0031550 @ hg38
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10687605-10692417:+
Coord C1 exon
chr19:10687605-10688114
Coord A exon
chr19:10688550-10688678
Coord C2 exon
chr19:10689179-10692417
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTTCTCTCCCCCAGACT
3' ss Score
11.2
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
TATAACCATGGACAAGGCAGCTACTCCTACTCGAACTCCTACAACTCTCCCGGGGGCGGGGGCGGATCCGACTACAACTACGAGAGCAAATTCAGTGAGTTGGCTTCCAGAGCCCCTCGGCCGGGCCAGGGTCCAGGCCCCAGCAGTGCAGCCCACGGAGTGGCAGAAGCTCGGCACTGCCCAGACCTCTGGCTGAGGGCCTTAGGAGGAGGACAAGTGGTGCTGGCTGCGGGCGGGTGCTAGGAAGATGGGGCGTGGGACCTCATGGTGCCGTCTCCGCCACTCTCTCTGGTGTGTTCTCCGAAGGCAGGGTAGCTGAGGCCTCTGTCCCGAGGCCCTGGCTGTGGGTGAGGCTGCAAGGTGACTTCCTGGGACTTGCTCTAGAGAGTTTTGCATCCAGCCCCTGCAAGAGCCTGACCTCTCCGCCACCGCCTTTCCGCTTCCTCATGCGCAGACCCAGCAGGCCCGGGCTGCACCAGTGACCCAGTGGGGCTGAGTAG
Seq A exon
ACTACAGTGGTAGTGGAGGCCGAAGCGGCGGGAACAGCTACGGCTCAGGCGGGGCATCCTACAACCCAGGGTCACACGGGGGCTACGGCGGAGGTTCTGGGGGCGGCTCCTCATACCAAGGCAAACAAG
Seq C2 exon
GAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAAGCCCCCGCGGGGCGGAGATTTCTACCTTCTGCACTTACTCCCCATCAGAAGATCGAGTTTTATGCATCACAGTTAACATGTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCTGTGTCGTGAGGTGCAGCGGGTCACCCTGTGGCCCGTCCTGTGACCCATATTTAGCCGTGTTTGGGACTCCGTGTCTTCAATGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAGAGTTTTTGAGTTTTTGCAGTTCAGTATCCCTCTGTCTATTCACACTTCGTGTTAGTGGTAACTCAGTTTGTCTTTAAATAGTTACAGAAGGGATACGTCATTTGTTAATGCTTTTGTGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-'55-61,'55-60,56-61
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.994 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCCTGGGACTTGCTCT
R:
GTGGTCTGCGTTTCTGCCATA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development