RnoEX0043977 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22435560-22440410:+
Coord C1 exon
chr8:22435560-22435613
Coord A exon
chr8:22439696-22439824
Coord C2 exon
chr8:22440274-22440410
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACTGATTTCTTTCCCTCAGACT
3' ss Score
9.13
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTACA
Seq A exon
ACTACAGTGGTAGTGGAGGCCGGAGTGGAGGGAACAGCTATGGCTCCAGCGGGTCATCCTACAACACAGGCTCACATGGGGGTTATGGCGCAGGTTCTGGAGGCAGCTCTTCATACCAAGGCAAACAAG
Seq C2 exon
GAGGCTACTCATCACAGTCAAACTACAGCTCCCCTGGGTCCAGCCAGAGCTACAGCGGCCCCGCCAGCTCCTACCAGTCCTCACAGGGTGGCTACAGTCGGAACACAGAACACAGCATGAACTACCAGTACAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000079230fB6870
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGGATATGGAAGCTATGG
R:
TGTACTGGTAGTTCATGCTGTGT
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]