HsaEX0031550 @ hg19
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10798022-10803093:+
Coord C1 exon
chr19:10798022-10798384
Coord A exon
chr19:10799226-10799354
Coord C2 exon
chr19:10799855-10803093
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTTCTCTCCCCCAGACT
3' ss Score
11.2
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCAGTTCTACAGCAACGGAGGGCATTCTGGGAATGCCAGTGGCGGTGGCGGCGGGGGCGGTGGTGGCTCCTCCGGCTATGGCTCCTACTACCAAGGTGACAACTACAACTCACCGGTGCCCCCAAAACACGCTGGGAAGAAGCAGCCGCACGGGGGCCAGCAGAAGCCCTCCTACGGCTCGGGCTACCAGTCCCACCAGGGCCAGCAGCAGTCCTACAACCAGAGCCCCTACAGCAACTATGGCCCTCCACAGGGCAAGCAGAAAGGCTATAACCATGGACAAGGCAGCTACTCCTACTCGAACTCCTACAACTCTCCCGGGGGCGGGGGCGGATCCGACTACAACTACGAGAGCAAATTCA
Seq A exon
ACTACAGTGGTAGTGGAGGCCGAAGCGGCGGGAACAGCTACGGCTCAGGCGGGGCATCCTACAACCCAGGGTCACACGGGGGCTACGGCGGAGGTTCTGGGGGCGGCTCCTCATACCAAGGCAAACAAG
Seq C2 exon
GAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAAGCCCCCGCGGGGCGGAGATTTCTACCTTCTGCACTTACTCCCCATCAGAAGATCGAGTTTTATGCATCACAGTTAACATGTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACGTTGCTGTGTCGTGAGGTGCAGCGGGTCACCCTGTGGCCCGTCCTGTGACCCATATTTAGCCGTGTTTGGGACTCCGTGTCTTCAATGGTTTGTTAGTTGCCATTACAACTTTGTCTGGGTAGAGTTTTTGAGTTTTTGCAGTTCAGTATCCCTCTGTCTATTCACACTTCGTGTTAGTGGTAACTCAGTTTGTCTTTAAATAGTTACAGAAGGGATACGTCATTTGTTAATGCTTTTGTGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-'25-27,'25-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGTCCTACAACCAG
R:
TGTGAGGACTGGTAGGAGCTG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)