BtaEX6038208 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17017778-17021420:-
Coord C1 exon
chr7:17021367-17021420
Coord A exon
chr7:17021031-17021245
Coord C2 exon
chr7:17017778-17017920
Length
215 bp
Sequences
Splice sites
3' ss Seq
GTCCCACCCCTCTTGGCCAGGGC
3' ss Score
5.65
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTGGAAATCAAGAAAACAGAAGGAAGAGATCTGACTTTCAACAAGAACTTGAG
Seq A exon
GGCTGTGGTGTCAGTGCTGGGCTTATGGCTGCGGGACCACCCTCAGGATTTCTGGGACCCCCCTGCCCACTCGGACCTAGGCAGTGTTTGCAACTTTCTGGGCTGGGCAGCTCCATCAGGGGCTGAGGCCCAGGAGGCTGAAAAGCTGCTGGGAGATTTCCTGAAGGAGGCGAAGACAGAGCAGGAGGAAGAGGAGCAGTGCCAGACACGGGCAG
Seq C2 exon
GACCCCCTGGGACTGCCCAGATCCTCTGCCCAGACTCCCCGATGGGCTGCCTGGAAGACGAGGAGGGCCTCGTGTGGGAAGGCCCTGAGCTTCTGGACTTCAGTGTAGACGACGTGGCGGAGCAGCTGACCCTTATGGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.274 C2=0.250
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.8=100)
A:
PF0061815=RasGEF_N=PD(29.9=43.8)
C2:
PF0061714=RasGEF=PU(7.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAATCAAGAAAACAGAAGGA
R:
CACGTCCATAAGGGTCAGCTG
Band lengths:
197-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]