DreEX6020287 @ danRer10
Exon Skipping
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:7989607-7994038:-
Coord C1 exon
chr6:7993994-7994038
Coord A exon
chr6:7991235-7991404
Coord C2 exon
chr6:7989607-7989761
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGCTC
3' ss Score
9.3
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AGAGGACATGGTCACCAATCTGAACAACAGTGTCTGTGTCAAGAG
Seq A exon
CTCTCTACCTCGTCTGATCAGACTCTGGTTAGACGAGTTTCACGAGGACCTTCGGGACTCTCCGGATCACCAGGCTCTTCGGCTGCTCTGCGTTCATCTGCGTCATCGCCTCTGTTGCAGACGTCTGGTTAACCAAGCCGATGCTCTTCTTAGAAAGTTTCAGACTGAAG
Seq C2 exon
ACAAGCAAATATGTACATCAGCAGAGGTCAATGCCTCTGCTGTTGAGAATCCTGCAACTGAAGACAACTTGGACGGACAGGAAGTACAAGAAATTGGTGATGTACTGGACTTCCCTGCACAGGACATTGCCGAGCAGCTTACAATATTAGACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(15.6=100)
A:
PF0061815=RasGEF_N=PD(34.4=56.9)
C2:
PF0061714=RasGEF=PU(7.0=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACATGGTCACCAATCTGA
R:
TCTAATATTGTAAGCTGCTCGGCA
Band lengths:
196-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]