RnoEX6034944 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22994041-22998942:-
Coord C1 exon
chr8:22998889-22998942
Coord A exon
chr8:22998528-22998742
Coord C2 exon
chr8:22994041-22994180
Length
215 bp
Sequences
Splice sites
3' ss Seq
ACATACCCCTCTCTGTCCAGGGC
3' ss Score
8.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTAGACAGCAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
Seq A exon
GGCTGTAGTTTCGGTACTGGGATCTTGGCTGCGAGATCATCCTCAGGACTTCCGGGATCCCCCTGATCATCAGAACCTGGGTGATGTCCGAATCTTTCTGGGCTGGGCAGCCCCAGGAGGGGCAGAAGTCAGGGAAGCAGAGAAACTTCTAGAAGATTTCTTGAAGGAGGCTAAGGAAGAGCAGACAGAGGGGGAGCAGCGACTGGCTTGGGCAG
Seq C2 exon
GCCCTCCCTGGGCTGCCCAGTCTCCCAGATCAGAGTTTGCAGAGGATTACTCGGAAGAGGAAGGCCTCAGGTCAGAAGGCCCAGAGCTCCTGGACTTTAGCGTGGATGAAGTGGCGGAGCAGCTGACTCTTATGGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.438 C2=0.266
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.5=100)
A:
PF0061815=RasGEF_N=PD(29.4=43.8)
C2:
PF0061714=RasGEF=PU(8.0=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGACAGCAAGAGGACAGA
R:
CATAAGAGTCAGCTGCTCCGC
Band lengths:
188-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]