BtaEX6038211 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17015921-17017650:-
Coord C1 exon
chr7:17017435-17017650
Coord A exon
chr7:17016120-17016223
Coord C2 exon
chr7:17015921-17016011
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCCTCCACCCCGCTCCCCAGCGC
3' ss Score
6.81
5' ss Seq
CCGGTGACC
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAGCTCTTCTCGCGCCTGCGGCCCTTCGAGTGCCTGGGCTCCGTGTGGTCGCAGCGAGACCGGCCGGGGGCCACAAGCATCGCCCCCACTGTGCGCGCCACCGTGACCCAGTTCAACACAGTGACCGGCTGCGTGCTGGGCTCAGTGCTCGGGGAACCGGGCCTGGCCGCCCCGCAGAGGGCGCAGCGGCTGGAGAAGTGGATCCGCATAGCTCAG
Seq A exon
CGCTGCCGGGAACTGCGGAACTTCTCCTCCCTGCGTGCCATCCTGTCCGCCCTGCAGTCTAACCCCATCTACAGGCTGAAGCGCAGCTGGGGCGCCGTGAGCCG
Seq C2 exon
GGAACCATTATCCACTTTCAGGAAACTTGCCCAAATTTTCTCCGATGAGAACAACCATCTGAGCAGCAGAGAGATTCTCTCCCAGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'8-10,'8-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(33.5=100)
A:
PF0061714=RasGEF=FE(16.0=100)
C2:
PF0061714=RasGEF=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTCGCAGCGAGAC
R:
TGCTGCTCAGATGGTTGTTCT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]