MmuEX6064510 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21980502-21981505:-
Coord C1 exon
chr9:21981290-21981505
Coord A exon
chr9:21980684-21980787
Coord C2 exon
chr9:21980502-21980586
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGCTCCCCTCTCACCCCTAGCGG
3' ss Score
7.44
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GAGCTCTTCTTGCGCGTGAGGTCCTGCGAATGCCTGGGTTCCATGTGGTCTCAGCGCGACCGGCCAGGAGCTGCAGGCATCTCTCCCACAGTGCGTGCCACCGTAGCCCAGTTCAATACGGTGACCGGCTGCGTGCTGGGCTCGGTGCTCGCTGCGCCCGGCCTGGCGGCCTCGCAGAGGGCACAGCGCATCGAAAAATGGATTCGCATCGCCCAG
Seq A exon
CGGTGCAGGGAACTACGAAATTTCTCTTCATTGCGAGCGATCCTGTCCGCCCTGCAATCTAACCCCATCTACAGACTCAAGCGCAGCTGGGGAGCTGTGAGCCG
Seq C2 exon
GGAACCGCTGTCTGTTTTCAGGAAACTGTCACAGATTTTTTCTGATGAGGATAACCATCTCAGCAGCCGAGCGATTCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-'8-17,'8-15,9-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.172
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(34.1=100)
A:
PF0061714=RasGEF=FE(16.3=100)
C2:
PF0061714=RasGEF=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCCTGGGTTCCATGTGG
R:
CGGCTGCTGAGATGGTTATCC
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types