HsaEX0053327 @ hg19
Exon Skipping
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11515823-11517119:-
Coord C1 exon
chr19:11517095-11517119
Coord A exon
chr19:11515999-11516102
Coord C2 exon
chr19:11515823-11515907
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCGTCCCCACCGCCTGGCAGCGC
3' ss Score
5.63
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GGAGAAGTGGATCCGCATCGCCCAG
Seq A exon
CGCTGCCGAGAACTGCGGAACTTCTCCTCCTTGCGCGCCATCCTGTCCGCCCTGCAATCTAACCCCATCTACCGGCTCAAGCGCAGCTGGGGGGCAGTGAGCCG
Seq C2 exon
GGAACCGCTATCTACTTTCAGGAAACTTTCGCAGATTTTCTCCGATGAGAACAACCACCTCAGCAGCAGAGAGATTCTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.232 A=0.039 C2=0.172
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(83.6=98.4)
A:
PF0061714=RasGEF=FE(16.1=100)
C2:
PF0061714=RasGEF=PD(15.1=64.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTGGATCCGCATCGC
R:
TGGAAAAGAATCTCTCTGCTGCT
Band lengths:
108-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)