RnoEX6034946 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22992500-22993952:-
Coord C1 exon
chr8:22993737-22993952
Coord A exon
chr8:22992668-22992771
Coord C2 exon
chr8:22992500-22992584
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCTCTTAATCCTAGCGG
3' ss Score
6.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCTCTTCCTGCGAGTGCGGTCCTGCGAGTGCCTGGGTTCCATGTGGTCTCAGCGCGACCGGCCGGGAGCTGCCGGCATCTCTCCCACAGTGCGCGCCACCGTGGCCCAGTTCAATGCGGTGACCGGCTGTGTGCTGGGCTCGGTGCTCGCTGCGCCCGGCCTGGCGGCCTCGCAGAGGGCACAACGCATTGAAAAATGGATTCGCATCGCCCAG
Seq A exon
CGGTGCCGGGAACTACGAAATTTCTCTTCCCTACGAGCGATCCTGTCCGCCCTGCAGTCTAACCCTATCTACAGGCTCAAGCGCAGCTGGGGAGCTGTGAGCAG
Seq C2 exon
GGAACCACTGTCTGTTTTCAGGAAACTGTCGCAGATTTTTTCTGATGAGGATAACCATCTCAGCAGCCGAGCGATTCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.172
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(35.3=100)
A:
PF0061714=RasGEF=FE(16.9=100)
C2:
PF0061714=RasGEF=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTTCCATGTGGTCTCAG
R:
CGGCTGCTGAGATGGTTATCC
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]