BtaEX6038218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17008969-17010962:-
Coord C1 exon
chr7:17010810-17010962
Coord A exon
chr7:17010607-17010721
Coord C2 exon
chr7:17008969-17009084
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCCCAGCCTCTCTTTGCAGCTC
3' ss Score
9.4
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGCCCCTGAGCCCGGACCTGCCAGGCCCCTGGTCCCTGGCCCTACCCTTGAGTGGCCCTCGTATCTCCCTCCCTGGGCAGCAGGGCTCAGAGGCCCGCGTCATCCGGGTCAGCATCGACAATGACCATGGCAATCTGTATCGGAGCATCTTG
Seq A exon
CTCACTAGTCAGGACAAGGCCCCCACCGTGGTCCAGCGAGCCTTGGAAAAACACAATGTGGCCGAGCCCTGGGTCCAGGACTATCAGCTCTTCCAAGTCCTTCCTGGGGACAGAG
Seq C2 exon
AGCTCCTGATTCCTGACAACGCCAACGTGTTCTATGCCATGAGCCCAGCCGCCCCTGGAGACTTCGTGCTGCGGCGGAAGGAGGGGGCCCAGCATACAACCTCAGTCTCCCTATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.282 C2=0.256
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=39.2)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=71.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTCCCTGGCCCTA
R:
GGATAGGGAGACTGAGGTTGT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]