RnoEX6034952 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22979181-22986083:-
Coord C1 exon
chr8:22985931-22986083
Coord A exon
chr8:22985373-22985487
Coord C2 exon
chr8:22979181-22981372
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTTCTTCTTTTCCAGCTT
3' ss Score
11.35
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTGTCCCTGAGCATGGAGCCACCAGGGCCCTGGCCCATGACCTTGACCCCGAGCAGCTCTCGAACTCCCCTCCTTGGGCAGCAGACTTCAGAGGCCCGCGTCATCCGCGTCAGCATCAACAATAACCATGGGAATCTCTATCGGAGCATCTTG
Seq A exon
CTTACTTGTCAGGATAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGGGACTACCAGCTCCTCCAGGTCTTGCCTGGGGACAGAG
Seq C2 exon
AGCTCCTGATTCCTGACAGTGCCAATGTCTTCTATGCTATGAACCCAGCTGCCCCTGGTGACTTCTTACTTCGTCGGAAGGAGGGGACAGGACATACACCCTCTGCCTCCCCAAGCTGAGGCGGTGCTCTCCCTGTCCTGAGCCAGAGGCACAGCTGACAGCTTGGAACCTGGATTTTACTACCATCAAAGTAGGGGCCCTGGAGAGCCTCTGTCCCCAGTGGAAACCATTTTGCTCTGTACCCTGGGGTCCCCCAACTTTGGGCCATTGGAGCCCCATCTCTTTGACTCCCTTGGCCCTTGACCATTATTCTAAAAGCATGGATGTGTGGGAAGAGTGTAAAACTAGGAAGAATCAAGGGCGCTCAGCTTAGGTGGGAGAGCCTTTGCCCAGCAGCCCCAGACCCTGGATGGTTTCCCAGCACTTCCAAAATAAAAGTCCTAAGGGACTTGGACTATGAGATGCAGTTCAGTCACATTCTAACATTCAGGACTCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'22-30,'22-25,23-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.538 C2=0.462
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=39.2)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGCGTCAGCATCAACAAT
R:
CTCCAGGGCCCCTACTTTGAT
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]