HsaEX6093074 @ hg19
Exon Skipping
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11504735-11508273:-
Coord C1 exon
chr19:11508121-11508273
Coord A exon
chr19:11507920-11508034
Coord C2 exon
chr19:11504735-11505196
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCCCGCCCCTCTCTTCCAGCTG
3' ss Score
11.84
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CTGCCCCTGAGCCTGGACCTGCCCAGCCCCCGGCCCTTCGCTTTGCCTCTGGGCAGCCCTCGAATCCCCCTCCCGGCGCAGCAGAGCTCGGAGGCCCGTGTCATCCGCGTCAGCATCGACAATGACCACGGGAACCTGTATCGAAGCATCTTG
Seq A exon
CTGACCAGTCAGGACAAAGCCCCCAGCGTGGTCCGGCGAGCCTTGCAGAAGCACAATGTGCCCCAGCCCTGGGCCTGTGACTATCAGCTCTTTCAAGTCCTTCCTGGGGACCGGG
Seq C2 exon
TGCTCCTGATTCCTGACAATGCCAACGTCTTCTATGCCATGAGTCCAGTCGCCCCCAGAGACTTCATGCTGCGGCGGAAAGAGGGGACCCGGAACACTCTGTCTGTCTCCCCAAGCTGAGGCAGCCCTGTCCTCTCCACAAGACACAAGTCCCACAGGCAAGCTTGCGACTCTTCTCCTGGAAAGCTGCCATCCCCCAGTAGAGGCCACTGTGCTGTGTATCCCAGGACCACCACCCAACTGTAGCCCATTGGACCCCATCTCTTTTTCTGACTCTGTTGGTACTAGATCCATATTCCAAAGACATCAGCCCATGGGTGGCTGGTGGAGAGCTCAATCCCATAAATGTAGAAAGAGGTGGGGCATGGATACGTCAAATCCCTCCCCAGAGAAATCTTATAAATGTTAGAGACGCATCAGAAGTGACAGATGCGGATGAAAATAGTGACCAGAGTTATGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-'21-25,'21-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.282 C2=0.359
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=39.2)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATCGACAATGACCACG
R:
TACTGGGGGATGGCAGCTTTC
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)