MmuEX6064518 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21971004-21974540:-
Coord C1 exon
chr9:21974388-21974540
Coord A exon
chr9:21974022-21974136
Coord C2 exon
chr9:21971004-21972009
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCGTTCTTCTCCAGCTT
3' ss Score
9.51
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTCCCTGACCATGGACCCACCAGGGCCCTGGCCCGTGACCTTGACTCCGAGCAGCTCCCGAGTTCCCCTCCTCGGGCAGCAGACGTCAGAGGCCCGCGTCATCAGAGTCAGCATCAACAATAACCACGGGAACCTGTATCGGAGCATCTTG
Seq A exon
CTTACTTGTCAGGACAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGTGACTACCAGCTCTTCCAGGTCCTGCCTGGGGACAGAG
Seq C2 exon
AGCTCCTGATTCCAGACGGTGCCAACGTCTTCTACGCTATGAGCCCAGCTGCCCCTGGTGACTTCTTGCTTCGTCGGAAAGAGGGGACAGGACATACACTGTCTGCCTCCCCAACCTGAGGTGGTGCTCTCCTTGTTCTGGGCCAGAGGCACAGCTGATAGCTTGGAACTTGGATTCTACTACTATCAAAGTAGGGGCCTATTTTCTGGAGAGCCTCCACCCCCACTCATGGAAGCTATTTTGCTCTGTACCCCGGGGATCCCCAGCATTAGGCCATTGGACCCCATCTCTCTGACTCCCTGAGCCCCTCCCTGCCCATTATTCTAAGACCATGGATGTGTGAGGAGAGTGTAAAACTAGGAAAAATTAAGAACCCATAGAGCTGGGAGCTTAGCTTAGGTGGGCGAGCACCTGCCTAGCAGGCCCCAGACCCTGGATGGTTTCTCAGCACTTCTAAAAATAAAAGTCTTCAGGGGTTTTGCACTTCGGTCACATCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-'23-47,'23-45,24-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.359 C2=0.385
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=39.2)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTGACTCCGAGCAG
R:
AGAACAAGGAGAGCACCACCT
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types