GgaEX6015305 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7450084-7450855:-
Coord C1 exon
chr17:7450610-7450855
Coord A exon
chr17:7450348-7450462
Coord C2 exon
chr17:7450084-7450259
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACAATGCTGTGTGCTCATAGGTG
3' ss Score
8.32
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
TTCTGGGAATCCACCTCTCTCTCCTCCCTGGACACGTCGGGCATCGGCTCGGGCTCCAGCAGTGCCTCATCCTCCTCCGTCTCCTCCACGCCGGTGACAGCATCCCGCACTCACAAGCGTTCCGTCTCCGGCATCTCCAGCTACTCGTCCCTCTCGCTGCCCCTTTACAACCAGCAGGTCGATGACTGCTGTATCATCCGCGTCAGCCTGGCTGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGACGAGCCAGGATAAGACACCGGTCGTTATTCGCAAGGCCATGGCCAAACACAACTTGGATGGGGACCGGCCTGAAGACTACGAGCTCGTTCAGATCATCTCAGAGGAGAGAG
Seq C2 exon
AGCTGAAGATCCCCGACAACGCCAACGTCTTCTACGCCATGAACTCCGCCGCCAACTACGACTTCGTGCTGAAGAAGCGGGGTTTCTCCAAGGGGGTGAAGATCAAGCACGGCTCCAGCTCCACCCTGCCCAGGATGAAGCAGAAAGGCCTGAAGATCGCCAAAGGCATCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.154 C2=0.034
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.4)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCTACTCGTCCCTCTC
R:
TTTCTGCTTCATCCTGGGCAG
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]