RnoEX6016144 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7126409-7130548:+
Coord C1 exon
chr3:7126409-7126651
Coord A exon
chr3:7127762-7127876
Coord C2 exon
chr3:7129578-7130548
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCCATTCTTATTCAGGTG
3' ss Score
9.57
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCGGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCTACCACACCGGTGTCTACCACACGCACCCACAAGCGCTCTGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCACTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGGAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCCGAGGACTATGAGCTGCTGCAGATCATCTCAGAGGACCACA
Seq C2 exon
AGCTGAAAATTCCAGAGAACGCCAATGTGTTCTATGCCATGAACTCTGCCGCCAACTATGACTTCATCCTAAAGAAGCGGGCCTTCACTAAGGGGGCTAAAGTCAAGCATGGAGCCAGCTCCACTCTCCCTCGAATGAAGCAGAAGGGACTCAGGATTGCCAGAGGCATCTTCTAAGGACGTCTCCCAGGGGCTGGCTGGCTGGCTGGGGACTAAGCACTTACAGACTAGAGTGGCCCAGGCCACACAGGTACCTCTGCCCTCCTGCCAGCCCAGGCTACTCCCAGACTCCACTTTCACCCCGAACCTGTCCTGCTGCCGGGATTGACACCTGCCACTGACAGGCTGACCTGGCCTCCGGGGACCGCTCACCGCCTTAGGTGCCTTCTGCTCTCTGCAACCAGAGGACTAGCTGACTTTGCCAAGGGGTGCTGCCAGCTGGGCATGGAGCCTCGCCTGCCCTGGACAATGTCCACCACACTTTCCTGTCACCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'26-38,'26-36,28-38=AN
Average complexity
A_S
Mappability confidence:
86%=80=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.282 C2=0.017
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACTCTACAACCAGCAG
R:
GCAATCCTGAGTCCCTTCTGC
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]