MmuEX6099972 @ mm10
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28549290-28553081:+
Coord C1 exon
chr2:28549290-28549532
Coord A exon
chr2:28550449-28550563
Coord C2 exon
chr2:28552092-28553081
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCCATCCCAATTCAGGTG
3' ss Score
8.9
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCCGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCCACCACGCCCGTGTCTACCACGCGCACCCACAAGCGCTCCGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCTCTCTACAACCAGCAGGTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGACCAGCCAGGATAAGGCTCCGACTGTCATCCGAAAAGCCATGGACAAACACAACCTAGATGAGGACGAGCCGGAGGATTATGAGCTGGTGCAGATCATCTCAGAGGATCACA
Seq C2 exon
AGCTGAAGATTCCAGAAAACGCCAATGTGTTCTATGCCATGAACTCTACCGCCAACTATGACTTCATCCTAAAGAAGCGGACCTTCACTAAGGGGGCTAAAGTCAAGCATGGAGCCAGCTCCACCCTCCCTCGTATGAAGCAGAAGGGACTCAGGATTGCCAAAGGCATCTTCTAAGGACGTCTCCTGGGACGGGCTGACTGGCTGGAGACTAAGCACTTACAGACTAGAGTGGCCCTGGCCACACAGGTACCTCTGCCCACCTGCCAGTCCAGGCTACCCCCCTACTCCACTTTCACCCTGAACCTCTCCTGCTGCCGGGATTGACACCTGCCACTGACAGGCTGACCTGGCCTCTGGGGACCACTTGCCGCCTTCGGTGCCTTCTGCTCTCTGAAACCAGAGGACTAGCTGACTTTTGCCAAGGAGTGTTGCCAACTGGGCATGGGACCTTGCCTGCCCTGGACACTATCCACCACACTTTGCTGACACCTCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'33-45,'33-44,34-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.397 C2=0.034
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCACTGCCTCTCTACA
R:
GCAATCCTGAGTCCCTTCTGC
Band lengths:
258-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types