DreEX6050576 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30937184-30942603:-
Coord C1 exon
chr8:30942328-30942603
Coord A exon
chr8:30942094-30942208
Coord C2 exon
chr8:30937184-30940911
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTAATGATCATGGTTTTCAGGTC
3' ss Score
7.42
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTCTGGGAATCACCCACCCCATCATCTCTGGAGGCGTCTGGATCAGGCTTGTGTTTAGAGTCAGGCTGCAGCAGCTCCACATCTTCCTCCTCTTCCTCCTCGTCCTCAGTCTCAGCCTTCACAGGACGGACCTTCAACTTTCACAAGCGCTCAGTCTCTGGCATCTCAGACTACTCGTCTCTCAGTCTGCCGCTCTACAACCAGCAGGCAAACGACTGCTGCATCATCAGAGTCAGCCTGGACTCAGAAAACGGCAACATGTACAAAAGTATCCTG
Seq A exon
GTCACTAGTCAGGACAAAACCCCTGGGGTCATTAGGAAAGCCATGGCCAAACACAACCTGGACAATGACAAATCTGAAGACTATGAATTGTTACAGAGGGTCTCAAAGCATAAAG
Seq C2 exon
AACTCAGAATCCCAGATAATGGAAACGTTTTCTACGCCATGAACTCAACTGCCAACTACGACTTCTTGTTGAGAAAGCGTGGCGTCCCAAAAACCTGCCGCTCGAAAAGCTCCCCGAGCCTGACTCTACCACGCATGAAGCAGAAAGGCTTCAAAATCCCCAAGAGCTTCTTCTGAAAAGACTCTGAAGCTGTTGGAGATCATCCAGAGTCACTTTATTAACCCCAACAGTATTATCTGGATCTTTTATCCAATGGATTTTTTGCGTTACCGAGCTTCTGTTTTCTGAAAGGAAGCGACCCCTGCGTTTCCTGTCCTTTGGAGCTTCTACAACCGCCAACTGTGGTTCTTACAAGGTTTACCTTAAGACTGCACTTAAGAGCCACATTCATGCATGAGCACACTAAACAAAAACATTTCAAGCACTTTAGAACGGTCCTTAAAGCAAGAGATTTGTGGTCCTCTGTCCTTTTCAAATTCAAAATGAATTGACGTTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.282 C2=0.172
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(23.0=21.7)
A:
PF0078818=RA=FE(43.7=100)
C2:
PF0078818=RA=PD(31.0=45.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTTCCTCCTCGTCCTC
R:
GGCAGTTGAGTTCATGGCGTA
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]