BtaEX6047051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103126162-103130109:-
Coord C1 exon
chr11:103129867-103130109
Coord A exon
chr11:103128328-103128442
Coord C2 exon
chr11:103126162-103126372
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCGGCCCCTGCTCTGTCCAGGTG
3' ss Score
8.6
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCCGGCATCAGCTCGGCCTCCAGCAGCACGTCCTCCTCCTCGGCCTCCACCACGCCCGTGGCCAGCACGCGCACCCACAAGCGCTCCGTGTCCGGGGTCTGCAGCTACGGCTCCTCACTGCCCCTCTACAACCAGCAGGTGGGCGACTCCTGCATCATCCGGGTGAGCCTGGACGTGGACAACGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGACCAGCCAAGACAAGGCTCCGGCTGTAATCCGCAAGGCCATGGACAAACACAACCTGGATGAGGACGAGCCCGAAGACTACGAGCTGGTGCAGGTTATTTCGGATGATCGAA
Seq C2 exon
AGCTGAAGATCCCTGACAACGCCAACGTGTTCTACGCCATGAACTCTACCGCCAACTATGACTTTGTCCTAAAGAAACGGACCTTCACCAAGGGGACAAAGGTCAGACATGGAGCCAGCTCGACCCTCCCCCGCATGAAGCAGAAGGGACTCAAGATTGCCAAGGGCATCTTCTAACCAGTCCTTAGCTGCCAGCCACAGAGCCGCCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'15-29,'15-27,17-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.551 C2=0.198
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCACTGCCCCTCTACAA
R:
GAGTCCCTTCTGCTTCATGCG
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]