HsaEX6063721 @ hg19
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135973107-135977149:-
Coord C1 exon
chr9:135976907-135977149
Coord A exon
chr9:135975655-135975769
Coord C2 exon
chr9:135973107-135974149
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATCCCCCGCCGCGATGCAGGTG
3' ss Score
6.12
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTCTGGGAATCAGCCTCACAGTCATCCCCGGAGACCTCCGGCATCAGCTCAGCCTCCAGCAGCACCTCGTCCTCCTCAGCCTCCACCACGCCCGTGGCTGCCACACGCACCCACAAGCGCTCTGTCTCAGGGCTCTGCAACTCCAGCTCCGCGCTGCCGCTCTACAACCAGCAGGTGGGCGACTGCTGTATCATCCGCGTCAGCCTGGACGTGGACAATGGCAACATGTACAAGAGCATCCTG
Seq A exon
GTGACCAGCCAAGATAAGGCTCCGGCTGTAATCCGCAAGGCCATGGACAAACACAACCTGGAGGAGGAGGAGCCGGAGGACTATGAGCTGCTGCAGATTCTCTCAGATGACCGGA
Seq C2 exon
AGCTGAAGATCCCTGAAAACGCCAACGTCTTCTATGCCATGAACTCTACCGCCAACTATGACTTTGTCCTCAAGAAGCGGACCTTCACCAAGGGAGTGAAGGTCAAGCACGGAGCCAGCTCCACCCTCCCTCGCATGAAGCAGAAAGGACTCAAGATTGCCAAGGGCATCTTCTGAGGGCATCCTCCCAGGGTCTGGCTGGCTGGTAGCCAAGCACTTATGGACCAGAGTGGCCCAGGCCAGCTGGGCGCCTTCCTCCCACCTGCCAGCCCAGGGTACCCCAGACTCCAGTTTCATCCTGAACCTCTCCCGCTGCTGGGATTGACGCCTGCCATTGGTCAGGCTGACCTGGCCTCCCGTGGACCACTCGCTGCCTTAGGTGCCTTCTGCTCTCTGGAACCAGAGGACTAGCTGACTTTTGCCAAGGAGCAGTGCCAACGGGCATGGCATGGTGCCCTGCCTGCCCCCGGGCGCCACCTCTGTACACTTCCCTGACACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-'25-35,'25-33,28-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.402 C2=0.017
Domain overlap (PFAM):
C1:
PF0078818=RA=PU(22.7=24.7)
A:
PF0078818=RA=FE(43.2=100)
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCGACTGCTGTATCATC
R:
ATGCCCTCAGAAGATGCCCTT
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)