BtaEX6038432 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17847159-17849347:+
Coord C1 exon
chr7:17847159-17847338
Coord A exon
chr7:17848603-17848792
Coord C2 exon
chr7:17849123-17849347
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCCTGCCCACCTAGGCT
3' ss Score
8.84
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
TTCTGTGACCTGACCCTGCTCACAGCGGAGGAGCCTGACCGCCATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAGGAGGCCCTGTCAGCCCCCACCTGCTCCCCCACCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTTGAAGAGCAGAACCG
Seq A exon
GCTGCTGGAGGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCCCGGCGGAACAGTGGCTCCTCGCTGGTGTCCAGCTCCTCAGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACGTGGATTCTGTGGGGCCGGATAGCCAACGAGTGGGAGGAGTGGCGACGCCGGAAGGAGAAGCTGCTGAAG
Seq C2 exon
GAGCTGATCCGCAAGGGCATCCCACACCACTTCCGGGCCATCGTCTGGCAGCTCCTGTGCAGTGCCACAGACATGCCGGTTAAGAACCAGTACTCAGAGCTGCTCAAGATGTCGTCCCCCTGCGAGAAGCTCATCCGCAGGGACATCGCCCGCACCTACCCAGAGCACGAGTTCTTCAAGGGCCAGGACAGCCTAGGCCAGGAGGTCCTCTTCAATGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294-'1-5,'1-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGACTCCGAGAACCT
R:
CTGGCCCTTGAAGAACTCGTG
Band lengths:
255-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]