HsaEX0023379 @ hg19
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:30464]
Coordinates
chr19:7911382-7914031:+
Coord C1 exon
chr19:7911382-7911565
Coord A exon
chr19:7912618-7912807
Coord C2 exon
chr19:7913807-7914031
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGTCGGCCCTTCCTGCCCAGGCT
3' ss Score
8.16
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
ACAGAGCTGTGAACCAACCCCGCTCACGGCTAACAAGCCCACCCACCATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAGGAGGCCCTGTCGGCCCCCACCTGCTCCCCAACCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTCGAAGAGCAGAACCG
Seq A exon
GCTCCTGGAGGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCGCGGCGGAACAGTGGCTCCTCGCTAGTGTCCAGCTCCTCGGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACGTGGATCCTGTGGGGCCGGATCGCCAACGAGTGGGAGGAGTGGCGGCGCAGGAAGGAGAAGCTGCTCAAG
Seq C2 exon
GAGCTGATCCGCAAGGGCATCCCCCACCACTTCCGGGCCATCGTGTGGCAGCTTCTGTGCAGCGCCACGGACATGCCCGTCAAGAACCAGTACTCCGAGCTGCTCAAGATGTCCTCGCCGTGCGAGAAGCTGATCCGCAGGGACATCGCCCGCACCTACCCGGAACATGAGTTCTTCAAGGGCCAGGACAGCCTGGGCCAGGAGGTCCTCTTCAACGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTCCGAGAACCTCAGC
R:
TCCTGGCCCTTGAAGAACTCA
Band lengths:
253-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)