RnoEX0033426 @ rn6
Exon Skipping
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2606580-2610948:-
Coord C1 exon
chr12:2610766-2610948
Coord A exon
chr12:2607896-2608085
Coord C2 exon
chr12:2606580-2606804
Length
190 bp
Sequences
Splice sites
3' ss Seq
CTCCTACTCTTCTTGCCTAGGCT
3' ss Score
8.4
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
Exon sequences
Seq C1 exon
ATAGAGTTGTAACCTGGTATCTCCCTGGCTGATGAGCCTGTCCACCATGGCAAGCCCCACTCTGAGCCCCGACTCCTCATCTCAGGAGGCCCTGTCAGCACCCACCTGCTCCCCAACCTCTGACTCCGAGAACCTCAGCCCAGATGAGCTAGAACTACTGGCCAAGCTTGAGGAGCAGAACCG
Seq A exon
GCTCCTGGAAGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCCCGGAGGAACAGCGGCTCCTCCCTGGTATCCAGCTCCTCCGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACATGGATTCTCTGGGGCCGGATTGCCAACGAGTGGGAGGAATGGCGGCGCAGAAAGGAAAAGCTACTCAAG
Seq C2 exon
GAGCTGATCCGAAAGGGCATCCCACACCACTTCCGGGCCATCGTTTGGCAGCTCCTGTGCAGTGCCACAGATATGCCCGTCAAAAACCAGTACTCCGAGCTCCTCAAGATGTCCTCACCATGTGAGAAGCTGATCCGAAGGGACATTGCCCGCACCTATCCAGAGCATGAGTTCTTCAAAGGCCAGGACAGCCTGGGCCAGGAAGTCCTCTTCAATGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.4=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGCCCAGATGAGCTAG
R:
GCTGTCCTGGCCTTTGAAGAA
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]