HsaEX0023379 @ hg38
Exon Skipping
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7846496-7849145:+
Coord C1 exon
chr19:7846496-7846679
Coord A exon
chr19:7847732-7847921
Coord C2 exon
chr19:7848921-7849145
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGTCGGCCCTTCCTGCCCAGGCT
3' ss Score
8.16
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
ACAGAGCTGTGAACCAACCCCGCTCACGGCTAACAAGCCCACCCACCATGGCGAGCCCCACTCTGAGCCCCGACTCCTCATCCCAGGAGGCCCTGTCGGCCCCCACCTGCTCCCCAACCTCTGACTCCGAGAACCTCAGCCCCGATGAGCTGGAGCTGCTGGCCAAGCTCGAAGAGCAGAACCG
Seq A exon
GCTCCTGGAGGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCGCGGCGGAACAGTGGCTCCTCGCTAGTGTCCAGCTCCTCGGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACGTGGATCCTGTGGGGCCGGATCGCCAACGAGTGGGAGGAGTGGCGGCGCAGGAAGGAGAAGCTGCTCAAG
Seq C2 exon
GAGCTGATCCGCAAGGGCATCCCCCACCACTTCCGGGCCATCGTGTGGCAGCTTCTGTGCAGCGCCACGGACATGCCCGTCAAGAACCAGTACTCCGAGCTGCTCAAGATGTCCTCGCCGTGCGAGAAGCTGATCCGCAGGGACATCGCCCGCACCTACCCGGAACATGAGTTCTTCAAGGGCCAGGACAGCCTGGGCCAGGAGGTCCTCTTCAACGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459-'5-7,'5-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTCCGAGAACCTCAGC
R:
TCCTGGCCCTTGAAGAACTCA
Band lengths:
253-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development