MmuEX6034210 @ mm9
Exon Skipping
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4183488-4187465:+
Coord C1 exon
chr8:4183488-4183670
Coord A exon
chr8:4185961-4186150
Coord C2 exon
chr8:4187241-4187465
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCACTACTCTTCTTGCCTAGGCT
3' ss Score
8.14
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
ACAGAGCTGTAACCTGGCATCCCCCTGGCTGATGAGCCTGCCCACCATGGCAAGCCCCACTCTGAGCCCGGACTCCTCATCTCAAGAGGCCCTGTCAGCACCCACCTGCTCCCCAACCTCTGACTCCGAGAATCTCAGCCCAGATGAGCTAGAACTACTGGCCAAGCTCGAGGAGCAGAACCG
Seq A exon
GCTCCTGGAAGCCGACTCCAAGTCCATGCGCTCCATGAATGGCTCCCGGAGGAACAGTGGCTCCTCACTGGTATCCAGCTCCTCAGCCTCCTCCAACCTGAGCCACCTGGAGGAGGACACGTGGATTCTCTGGGGCCGAATTGCCAACGAGTGGGAGGAGTGGCGGCGCAGGAAGGAAAAACTACTCAAG
Seq C2 exon
GAGCTGATCCGGAAGGGCATCCCACACCACTTTCGGGCCATCGTCTGGCAGCTCCTGTGCAGTGCCACAGATATGCCCGTCAAAAACCAGTACTCTGAGCTCCTCAAGATGTCCTCCCCATGTGAGAAACTCATCAGGAGGGATATTGCCCGCACCTACCCAGAGCATGAATTCTTCAAAGGCCAGGACAGCCTGGGCCAGGAAGTCCTCTTCAATGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=0.406 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGAATCTCAGCCCAGA
R:
GCTGTCCTGGCCTTTGAAGAA
Band lengths:
252-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: