BtaEX6038638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013857 | SH2D3A
Description
Bos taurus SH2 domain containing 3A (SH2D3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205669]
Coordinates
chr7:18949883-18952243:+
Coord C1 exon
chr7:18949883-18950019
Coord A exon
chr7:18951408-18951757
Coord C2 exon
chr7:18952167-18952243
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCCCGATCCTCCATCCCCAGAAG
3' ss Score
7.14
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATGAGGAAGACTGAGGCCTGTTGGAAGTACAAAGCACAGACCCTGCACCCTCTGCCCCCGAGAGCTCCATGCAGGTGCCACAAGATGGAGAGGACTTTGTGGGCCAACCCTGGTACCACGGCCCCCTGTCCCGCCAG
Seq A exon
AAGGCCGAGGACCTTCTCCAGCAAGATGGTGACTTCTTAGTTCGTGCGTCCAAGTCCCGTGGGGGCCACCCTGTCATCTCCTGCCGCTGGCGGGGCTCAGCCCTGCACTTCGAGGTGCTTCGTGTGGCCCTGAGGCCTCGGCCAGGCCGGCCCACAGCCCTCTTTCAGCTAGAGGATGAGCGTTTCCCCAGCCTGCCTGCCCTGGTTCGCAGCTATGTGATTGGCCAGCGTCCACTGTCCCAAGCCACAGGGGCTGTGGCCTCCAGGCCAGTGCCACGGCAAGGACTAATTCGACGCAGCTTTAGTGAGGACACCCTTCCAGACGACCCGGCTCGCACAGAGCCGCTCAG
Seq C2 exon
GGATAGGAAGCGGAGTGATAGTCAGCCCGCAGGTTTGGAGCATATGTGGCGGTCACCAGAAGACCCTCCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013857-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.410 C2=1.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=34.8)
A:
PF0001719=SH2=PD(87.7=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAAGACTGAGGCCTGT
R:
CTGGTCCAGGAGGGTCTTCTG
Band lengths:
214-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]