RnoEX6011379 @ rn6
Exon Skipping
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226655186-226661401:+
Coord C1 exon
chr2:226655186-226655314
Coord A exon
chr2:226658164-226658606
Coord C2 exon
chr2:226661298-226661401
Length
443 bp
Sequences
Splice sites
3' ss Seq
ATTCATCATTTTGTCGACAGGTG
3' ss Score
8.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAACTGGAGGAGGAGCTACTGCTGAGCAGCGAGGACCTACGCAGCCATGCCTGGTACCACGGCCGGATCCCCAGACAG
Seq A exon
GTGTCTGAAAACCTTGTGCAGCGGGATGGGGACTTCCTGGTTCGTGACTCCCTGTCTAGCCCTGGAAACTTTGTCCTGACCTGTCAGTGGAAGAACCTTGCTCAGCACTTTAAGATCAACCGGACTGTTCTGCGGCTCAGCGAGGCCTACAGCCGTGTGCAGTACCAATTCGAGATGGAGAGCTTTGACTCCATCCCCGGGCTGGTACGCTGCTACGTGGGAAACCGGAGGCCCATCTCCCAGCAGAGCGGCGCCATCATCTTCCAGCCTATCAATAGGACAGTGCCCCTTTGGTGTCTGGAGGAGCGTTATGGCACCTCACCAGGCCGAGGCCGGGAGGGCAGCTTTGCTGAGGGAAGACCAGATGTGGTGAAGAGACTGAGCCTCACCACAGGTGGCATCCAGGCTCGGGACCACAGCTTGCCCAGAGGAAACCTCCTCAG
Seq C2 exon
GAATAAGGACAAGAGTGGCAGCCAGCCCGCCTGCCTGGATCACGTGCAGGACCGGAAGGCCGCAACACTCAAGGCTCACCAGTCTGAGAGTCACCTGCCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737-'7-6,'7-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.189 C2=0.917
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=48.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAAGGAGAGGCACATCA
R:
GATGGGCAGGTGACTCTCAGA
Band lengths:
231-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]