BtaEX6016545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:50040494-50048423:+
Coord C1 exon
chr3:50040494-50040622
Coord A exon
chr3:50043602-50044047
Coord C2 exon
chr3:50048320-50048423
Length
446 bp
Sequences
Splice sites
3' ss Seq
CTCGCCGTTCTGTCCCAAAGGTG
3' ss Score
8.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACGTCATGGACAGGACCCCCGAGAGGCTGAAGAAGGAGCTGGAGGAGGAGCTGCTGCTGAGCAGTGAGGATCTGCGCAGCCACGCCTGGTACCACGGCCGCATCCCCCGACAG
Seq A exon
GTGTCAGAAAACCTCATGCAGCGAGATGGTGACTTCCTGGTTCGTGATTCTCTGTCCAGCCCGGGAGACTTCGTCCTGACCTGCCAGTGGAAGAACCTCCCTCAGCACTTCAAGATCCGCCGGACGGTGGTGCGGCTCAGCGAGGCCTACAGCCGCGTGCAGTACCAGTTTGAGATGGAGAGCTTCGACTCCATCCCTGGCCTGGTACGCTGCTATGTGGGCAACCGGCGGCCCATCTCGCAGCAGAGCGGAGCCATCATCTTCCAGCCCGTCAACAGGACGGTGCCCCTGCGTTGCCTGGAGGAGCGCTACGGAGCCTCCTCCCCAGACCGGGCCCACGAGGGCAGCCTCACTGAGGGGAGGCCGGACGCGGCCAAGAGGCTGAGCCTCACTGTGGGCGGAACCCAGGCCCGAGAGCAGGGCTTGCCCAGGGGCAACCTCCTCAG
Seq C2 exon
AAATAAAGAGAAGAGTGGGAGCCAGCCAGCCTGCCTGGATCACATGCAGGACAGAAGAGCCTTGTCCCTCAAAGCCCACCAGTCAGAAAGTTACCTGCCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.295 C2=0.917
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=47.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGGAGAGGCACGTCAT
R:
GGTAACTTTCTGACTGGTGGGC
Band lengths:
222-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]