GgaEX1010658 @ galGal4
Exon Skipping
Gene
ENSGALG00000005816 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:HGNC:973]
Coordinates
chr8:12801758-12803891:+
Coord C1 exon
chr8:12801758-12801886
Coord A exon
chr8:12803011-12803453
Coord C2 exon
chr8:12803791-12803891
Length
443 bp
Sequences
Splice sites
3' ss Seq
TGTAATCTTTTTCCTTACAGGTA
3' ss Score
12.04
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTTCTAAGGAGCGGCAAGTTATGGACAACAGCCCAGAAAAACTGAAGAAAGAGTTAGAGGAAGAGCTGCAGCTAAGCAGTGAAGATCTGCGTAGCCATGCCTGGTACCACGGACGTATTCCTCGGCAG
Seq A exon
GTAGCAGAAGACCTAGTTCAGAGGGATGGAGATTTTCTGATCAGGGATTCTCTTTCCTGTCCTGGGAACTTCGTTCTTACCTGTCAGTGGAAGAATACCTCTCAGCATTTTAAAATCAACAGAACAATTCTAAGATTAAGCGAAGCCTACTGCCGTGTTCAGTATCAGTTTGAACTTGAAAGTTTTGACAGTATCCCTGGCTTAGTTAGATACTATGTTGGGAATCGCACACCAATATCAAAACAGAGTGGAGCAATTATTTTTCAGCCTATCAACAGGACTGTGCCTCTCAGGTGTCTAGAAGAAAAGTATGGCGTAATTCCAGACCGACAGAAAGAGCAAAGTATCCCTGAAGGAAAAACTGAAGCTGCAAAAAGACTGAGTCTTGGTATATCCAGCATGCAGTCCCAGGAGCAGAGCATACCTAGGGGCAATCTTTTGAG
Seq C2 exon
AAACAAAGAAAAAAGCGGTAGCCAGCCAGCTAGTTTGGATCACGTTCTGGACAAGAGATTCCCTCTTAAGACTCACCAGTCGGAGAGCTATCTGCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816-'13-11,'13-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.209 C2=0.686
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=48.0)
C2:
NO
Main Skipping Isoform:
ENSGALT00000009337fB5393
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAGGAGCGGCAAGTTATGG
R:
GCAGATAGCTCTCCGACTGGT
Band lengths:
222-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]