MmuEX6073845 @ mm9
Exon Skipping
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122207845-122214240:+
Coord C1 exon
chr3:122207845-122207973
Coord A exon
chr3:122211044-122211489
Coord C2 exon
chr3:122214137-122214240
Length
446 bp
Sequences
Splice sites
3' ss Seq
ATTCACCATTTTGACTACAGGTG
3' ss Score
6.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAATTGGAGGAGGAGCTGCTGCTGAGCAGCGAAGACCTACGCAGCCACGCCTGGTACCACGGCCGGATCCCCCGACAG
Seq A exon
GTGTCTGAAAACCTTGTGCAGCGGGATGGGGACTTCCTGGTTCGCGACTCCCTGTCGAGCCCCGGAAACTTTGTCCTGACCTGTCAGTGGAAGAACCTCGCTCAGCACTTTAAGATCAACCGGACTGTCCTGCGGCTCAGCGAGGCCTACAGCCGTGTGCAGTACCAATTCGAGATGGAGAGCTTTGACTCCATCCCGGGGCTGGTCCGCTGCTACGTGGGCAACCGGCGGCCCATCTCCCAACAGAGTGGTGCCATCATCTTCCAGCCCATCAATAGGACAGTGCCCCTCTGGTGTCTGGAGGAGCGTTATGGCACCTCCCCGGGCCGAGGCCGGGAGGGCAGCCTGGCTGAGGGAAGGCCAGACGTGGTGAAGAGGCTGAGCCTCACCACAGGCAGCAGCATCCAGGCTCGGGAACACAGCCTGCCCCGAGGAAACCTCCTCAG
Seq C2 exon
GAATAAAGAGAAGAGTGGCAGCCAGCCCGCCTGCCTGGATCACGTGCAGGACAGGAAGGCCTTAACCCTCAAAGCTCACCAGTCGGAGAGTCACCTGCCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121-'6-8,'6-7,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.248 C2=0.833
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=47.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAAGGAGAGGCACATCA
R:
TATTGGCAGGTGACTCTCCGA
Band lengths:
231-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: