GgaEX1010658 @ galGal3
Exon Skipping
Gene
ENSGALG00000005816 | BCAR3
Description
NA
Coordinates
chr8:14552081-14554214:+
Coord C1 exon
chr8:14552081-14552209
Coord A exon
chr8:14553334-14553776
Coord C2 exon
chr8:14554114-14554214
Length
443 bp
Sequences
Splice sites
3' ss Seq
TGTAATCTTTTTCCTTACAGGTA
3' ss Score
12.04
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTTCTAAGGAGCGGCAAGTTATGGACAACAGCCCAGAAAAACTGAAGAAAGAGTTAGAGGAAGAGCTGCAGCTAAGCAGTGAAGATCTGCGTAGCCATGCCTGGTACCACGGACGTATTCCTCGGCAG
Seq A exon
GTAGCAGAAGACCTAGTTCAGAGGGATGGAGATTTTCTGATCAGGGATTCTCTTTCCTGTCCTGGGAACTTCGTTCTTACCTGTCAGTGGAAGAATACCTCTCAGCATTTTAAAATCAACAGAACAATTCTAAGATTAAGCGAAGCCTACTGCCGTGTTCAGTATCAGTTTGAACTTGAAAGTTTTGACAGTATCCCTGGCTTAGTTAGATACTATGTTGGGAATCGCACACCAATATCAAAACAGAGTGGAGCAATTATTTTTCAGCCTATCAACAGGACTGTGCCTCTCAGGTGTCTAGAAGAAAAGTATGGCGTAATTCCAGACCGACAGAAAGAGCAAAGTATCCCTGAAGGAAAAACTGAAGCTGCAAAAAGACTGAGTCTTGGTATATCCAGCATGCAGTCCCAGGAGCAGAGCATACCTAGGGGCAATCTTTTGAG
Seq C2 exon
AAACAAAGAAAAAAGCGGTAGCCAGCCAGCTAGTTTGGATCACGTTCTGGACAAGAGATTCCCTCTTAAGACTCACCAGTCGGAGAGCTATCTGCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.209 C2=0.686
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=48.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAGGAGCGGCAAGTTATGG
R:
GCAGATAGCTCTCCGACTGGT
Band lengths:
222-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]