DreEX0016735 @ danRer10
Exon Skipping
Gene
ENSDARG00000016981 | bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:ZFIN;Acc:ZDB-GENE-080513-4]
Coordinates
chr8:15060179-15071168:-
Coord C1 exon
chr8:15071040-15071168
Coord A exon
chr8:15062661-15063100
Coord C2 exon
chr8:15060179-15060279
Length
440 bp
Sequences
Splice sites
3' ss Seq
AGCAAATATCTGTGTTATAGGTG
3' ss Score
6.81
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
TTCTCAAGAGACAAGTACATCTTGGATGGACCGCCGGAGAAACTTCGGAGGGAGTTGGAGGAAGAACTGAAACTAAGCAGTGAGGAACCGAGGAGCCATGCCTGGTATCACGGAGCCATTCCTAGACAG
Seq A exon
GTGGCTGAAAACCTGGTCCAGCGAGATGGAGATTTTCTGATCCGGGACTCTCTGTCCAGCCCTGGCAACTACGTTCTGACCTGTCAGTGGAAGAACAGCCCTCAACACTTCAAAATCAACAAGCGGGTCGTAGCCATGAACGAGGCCTACTCACGGGTTCAGTACCTGTTTGAGAAGGAGGGATTCGATAGCATCCCCGCACTGGTGCGATATTACGTGGGCAACCGTGAGCCGGTCTCTGAGGTCATCGGAGCGATTATCTTCCAGCCGATCAACAGAGCTCTGCCTCTGAGGTGCCTGGAGGAGAAATATGGAGTGGGATCTATACGTGTAGAGGCAGGATATCTGGAGAGAAAGAGCCTGACGTCCAAACGGCTGAGTCTGAATATCATGAATGGACACGGTCAGGATCACACCCTCAGCCGTGGAAACCTCCTCAG
Seq C2 exon
CAACAAGGATAAATGTGGAAGTCAACCAGCATGTCTAAACCACGTTCAGGAGAGGAGACGGCCGCTGAAGACCCATCAGTCGGAGAGCTTCCTCCCTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016981-'18-14,'18-13,21-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.115 C2=0.743
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
PF0001719=SH2=PD(87.7=48.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCTTGGATGGACCGCC
R:
GAAGCTCTCCGACTGATGGGT
Band lengths:
206-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]