BtaEX6038642 @ bosTau6
Exon Skipping
Description
Bos taurus thyroid hormone receptor interactor 10 (TRIP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001081530]
Coordinates
chr7:18961069-18964149:+
Coord C1 exon
chr7:18961069-18961178
Coord A exon
chr7:18963646-18963778
Coord C2 exon
chr7:18964004-18964149
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTGTCTCACCCTAGGGA
3' ss Score
10.58
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
ACAGTGGTGACTGAGGATTTCAGCCACTTGCCCCCGGAGCAGCAGAGAAAGCGACTGCAGCAGCAGCTGGAAGAACGGAACCGTGAACTACAGAAGGAGATGGACCAGAG
Seq A exon
GGAGGCCCTGAAGAAAATGAAGGATGTGTATGAAAAGACACCCCAGATGGGAGACCCAGCCAGCTTGGAACCCCGGATCACGGAAACCCTGAACAACATCGAACGGCTGAAACTGGAAGTACAGAAGTATGAG
Seq C2 exon
GCTTGGCTGGCAGAAGCTGAGAGCCGGGTCCTAAGCAACCGGGGAGACACCCTGGGCCGGCACACCCGGCCTCCAGACCCCCCAGCCAGCGCGCCGCCAGACAGCAGCAGCAACAGCAACAGTGGATCGCAAGAGAACAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013834-'1-3,'1-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.778 C2=0.857
Domain overlap (PFAM):
C1:
PF136541=AAA_32=FE(23.7=100),PF045028=DUF572=PU(21.7=97.3),PF143891=Lzipper-MIP1=PU(34.1=78.4),PF0218511=HR1=PU(30.7=62.2)
A:
PF136541=AAA_32=FE(28.9=100),PF045028=DUF572=FE(26.5=100),PF143891=Lzipper-MIP1=FE(51.8=100),PF0218511=HR1=FE(58.7=100)
C2:
PF136541=AAA_32=FE(31.6=100),PF045028=DUF572=FE(28.9=100),PF143891=Lzipper-MIP1=PD(11.8=20.4),PF0218511=HR1=PD(8.0=12.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGATTTCAGCCACTTGCC
R:
TCCTTGTTCTCTTGCGATCCAC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]