MmuEX6078764 @ mm10
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57257235-57261788:+
Coord C1 exon
chr17:57257235-57257344
Coord A exon
chr17:57261290-57261422
Coord C2 exon
chr17:57261640-57261788
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTCCTGTCGCAGGGA
3' ss Score
10.62
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACCGTGGCTACCGAAGATTTCAGTCACTTGCCCCCGGAGCAGCAGAGAAAGCGACTTCAGCAACAGCTGGAAGAGCGGAACCGAGAGTTGCAGAAGGAGGAGGACCAGAG
Seq A exon
GGAGGCCCTGAAGAAGATGAAAGATGTATATGAGAAAACACCACAAATGGGGGACCCTGCCAGCTTAGAGCCCCGCATTGCAGAGACCCTGGGCAACATTGAGAGGCTGAAGTTGGAAGTGCAGAAGTATGAG
Seq C2 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCTGATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-'17-26,'17-25,25-26
Average complexity
S
Mappability confidence:
93%=90=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.793 C2=0.893
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(34.5=78.4)
A:
PF143891=Lzipper-MIP1=FE(52.4=100)
C2:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGCTACCGAAGATTTC
R:
TCCTGGGATCCACTGTTGGTG
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types