MmuEX6078764 @ mm9
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57396658-57401211:+
Coord C1 exon
chr17:57396658-57396767
Coord A exon
chr17:57400713-57400845
Coord C2 exon
chr17:57401063-57401211
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGTCCTGTCGCAGGGA
3' ss Score
10.62
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACCGTGGCTACCGAAGATTTCAGTCACTTGCCCCCGGAGCAGCAGAGAAAGCGACTTCAGCAACAGCTGGAAGAGCGGAACCGAGAGTTGCAGAAGGAGGAGGACCAGAG
Seq A exon
GGAGGCCCTGAAGAAGATGAAAGATGTATATGAGAAAACACCACAAATGGGGGACCCTGCCAGCTTAGAGCCCCGCATTGCAGAGACCCTGGGCAACATTGAGAGGCTGAAGTTGGAAGTGCAGAAGTATGAG
Seq C2 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCTGATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-'11-18,'11-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=0.785 C2=0.893
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(34.5=78.4)
A:
PF143891=Lzipper-MIP1=FE(52.4=100)
C2:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGCTACCGAAGATTTC
R:
TCCTGGGATCCACTGTTGGTG
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: