RnoEX0093814 @ rn6
Exon Skipping
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9690604-9694896:-
Coord C1 exon
chr9:9694787-9694896
Coord A exon
chr9:9691018-9691150
Coord C2 exon
chr9:9690604-9690752
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGTCCGGTCTCAGGGA
3' ss Score
9.47
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACCGTGGTCACCGAAGATTTCAGTCACCTGCCCCCGGAGCAGCAGAGAAAGCGACTCCAGCAACAGTTGGAAGAGCGGAACCGAGAGTTGCAGAAGGAGGAGGACCAGAG
Seq A exon
GGAGGCCCTGAAGAAGATGAAAGATGTATATGAGAAAACACCACAAATGGGGGACCCCGCCAGCTTAGAGCCCCGCATTGCAGAGACCCTGGGCAACATTGAAAGGCTGAAGCTGGAAGTGCAGAAGTATGAG
Seq C2 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACACTAGGCCTCCTGATCCCCCAACTACTGCCCCACCTGATAGTAGCAGTAGCAGCAACAACAGTGGATCCCAGGATAATAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524-'18-21,'18-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.778 C2=0.900
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PU(34.5=78.4)
A:
PF143891=Lzipper-MIP1=FE(52.4=100)
C2:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGTCACCGAAGATTTC
R:
GGATCCACTGTTGTTGCTGCT
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]